Unified Approach to KdV Modulations

We develop a unified approach to integrating the Whitham modulation equations. Our approach is based on the formulation of the initial value problem for the zero dispersion KdV as the steepest descent for the scalar Riemann-Hilbert problem, developed by Deift, Venakides, and Zhou, 1997, and on the method of generating differentials for the KdV-Whitham hierarchy proposed by El, 1996. By assuming the hyperbolicity of the zero-dispersion limit for the KdV with general initial data, we bypass the inverse scattering transform and produce the symmetric system of algebraic equations describing motion of the modulation parameters plus the system of inequalities determining the number the oscillating phases at any fixed point on the $x, t$ - plane. The resulting system effectively solves the zero dispersion KdV with an arbitrary initial data.Comment: 27 pages, Latex, 5 Postscript figures, to be submitted to Comm. Pure. Appl. Mat

Remote sensing estimates of stand-replacement fires in Russia, 2002–2011

The presented study quantifies the proportion of stand-replacement fires in Russian forests through the integrated analysis of Landsat and Moderate Resolution Imaging Spectroradiometer (MODIS) data products. We employed 30 m Landsat Enhanced Thematic Mapper Plus derived tree canopy cover and decadal (2001–2012) forest cover loss (Hansen et al 2013 High-resolution global maps of 21st-century forest cover change Science 342 850–53) to identify forest extent and disturbance. These data were overlaid with 1 km MODIS active fire (earthdata.nasa.gov/data/near-real-time-data/firms) and 500 m regional burned area data (Loboda et al 2007 Regionally adaptable dNBR-based algorithm for burned area mapping from MODIS data Remote Sens. Environ. 109 429–42 and Loboda et al 2011 Mapping burned area in Alaska using MODIS data: a data limitations-driven modification to the regional burned area algorithm Int. J. Wildl. Fire 20 487–96) to differentiate stand-replacement disturbances due to fire versus other causes. Total stand replacement forest fire area within the Russian Federation from 2002 to 2011 was estimated to be 17.6 million ha (Mha). The smallest stand-replacement fire loss occurred in 2004 (0.4 Mha) and the largest annual loss in 2003 (3.3 Mha). Of total burned area within forests, 33.6% resulted in stand-replacement. Light conifer stands comprised 65% of all non-stand-replacement and 79% of all stand-replacement fire in Russia. Stand-replacement area for the study period is estimated to be two times higher than the reported logging area. Results of this analysis can be used with historical fire regime estimations to develop effective fire management policy, increase accuracy of carbon calculations, and improve fire behavior and climate change modeling efforts

Surgical outcomes in patients with drug-resistant bilateral temporal lobe epilepsy confirmed via magnetic resonance imaging

Introduction. In patients with drug-resistant temporal lobe epilepsy (TLE), surgical treatment is aimed to resect an epileptogenic zone (EZ) followed by seizure control. Despite complicated EZ location, surgical resection should be considered as a treatment of choice in bilateral TLE. Objective: to evaluate surgical outcomes and factors contributing to outcomes in patients with drug-resistant bilateral TLE confirmed via magnetic resonance imaging. Materials and methods. The study included patients with unilateral (n = 50) and bilateral (n = 50) temporal lobe involvement. The results of surgical treatment were evaluated according to the classification of J. Engel (1993). Results. Favorable outcomes of surgical treatment (Engel I and Engel II) in the group with unilateral temporal lobe involvement were found in 98% of patients after 12 months, in 88% after 24 months, and in 100% after 48 and 60 months after surgery. In the group with bilateral temporal lobe involvement outcomes of surgical treatment were favorable in 41% of patients after 12 months, in 50% after 24 months, in 39% after 48 months, and in 50% of patients after 60 months post-surgery. Conclusion. Early onset, burdened perinatal history, and MRI-confirmed left temporal lobe involvement contribute to the poor outcome (Engel III and Engel IV) in the bilateral TLE group. Engel I outcomes were more common in the patients with unilateral TLE while Engel IIIV outcomes were more common in the patients with bilateral TLE

The T7-Related Pseudomonas putida Phage ϕ15 Displays Virion-Associated Biofilm Degradation Properties

Formation of a protected biofilm environment is recognized as one of the major causes of the increasing antibiotic resistance development and emphasizes the need to develop alternative antibacterial strategies, like phage therapy. This study investigates the in vitro degradation of single-species Pseudomonas putida biofilms, PpG1 and RD5PR2, by the novel phage ϕ15, a ‘T7-like virus’ with a virion-associated exopolysaccharide (EPS) depolymerase. Phage ϕ15 forms plaques surrounded by growing opaque halo zones, indicative for EPS degradation, on seven out of 53 P. putida strains. The absence of haloes on infection resistant strains suggests that the EPS probably act as a primary bacterial receptor for phage infection. Independent of bacterial strain or biofilm age, a time and dose dependent response of ϕ15-mediated biofilm degradation was observed with generally a maximum biofilm degradation 8 h after addition of the higher phage doses (104 and 106 pfu) and resistance development after 24 h. Biofilm age, an in vivo very variable parameter, reduced markedly phage-mediated degradation of PpG1 biofilms, while degradation of RD5PR2 biofilms and ϕ15 amplification were unaffected. Killing of the planktonic culture occurred in parallel with but was always more pronounced than biofilm degradation, accentuating the need for evaluating phages for therapeutic purposes in biofilm conditions. EPS degrading activity of recombinantly expressed viral tail spike was confirmed by capsule staining. These data suggests that the addition of high initial titers of specifically selected phages with a proper EPS depolymerase are crucial criteria in the development of phage therapy

Advances in Molecular Quantum Chemistry Contained in the Q-Chem 4 Program Package

A summary of the technical advances that are incorporated in the fourth major release of the Q-Chem quantum chemistry program is provided, covering approximately the last seven years. These include developments in density functional theory methods and algorithms, nuclear magnetic resonance (NMR) property evaluation, coupled cluster and perturbation theories, methods for electronically excited and open-shell species, tools for treating extended environments, algorithms for walking on potential surfaces, analysis tools, energy and electron transfer modelling, parallel computing capabilities, and graphical user interfaces. In addition, a selection of example case studies that illustrate these capabilities is given. These include extensive benchmarks of the comparative accuracy of modern density functionals for bonded and non-bonded interactions, tests of attenuated second order Møller–Plesset (MP2) methods for intermolecular interactions, a variety of parallel performance benchmarks, and tests of the accuracy of implicit solvation models. Some specific chemical examples include calculations on the strongly correlated Cr2 dimer, exploring zeolite-catalysed ethane dehydrogenation, energy decomposition analysis of a charged ter-molecular complex arising from glycerol photoionisation, and natural transition orbitals for a Frenkel exciton state in a nine-unit model of a self-assembling nanotube

Software for the frontiers of quantum chemistry:An overview of developments in the Q-Chem 5 package

This article summarizes technical advances contained in the fifth major release of the Q-Chem quantum chemistry program package, covering developments since 2015. A comprehensive library of exchange–correlation functionals, along with a suite of correlated many-body methods, continues to be a hallmark of the Q-Chem software. The many-body methods include novel variants of both coupled-cluster and configuration-interaction approaches along with methods based on the algebraic diagrammatic construction and variational reduced density-matrix methods. Methods highlighted in Q-Chem 5 include a suite of tools for modeling core-level spectroscopy, methods for describing metastable resonances, methods for computing vibronic spectra, the nuclear–electronic orbital method, and several different energy decomposition analysis techniques. High-performance capabilities including multithreaded parallelism and support for calculations on graphics processing units are described. Q-Chem boasts a community of well over 100 active academic developers, and the continuing evolution of the software is supported by an “open teamware” model and an increasingly modular design